Detailed information of SNP:
|
SNP ID:
sf0719740213(Gbrowse)
Chromosome: chr07 Position: 19740213 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 82.84% | 17.16% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 445 | 51.69% | 48.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 303 | 48.51% | 51.49% |
| Tropical Japonica | 77 | 79.22% | 20.78% |
| Japonica Intermediate | 65 | 33.85% | 66.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719740213 | T->A | LOC_Os07g33050(LOC_Os07g33050.1) | INTRON |