Detailed information of SNP:
|
SNP ID:
sf0719798833(Gbrowse)
Chromosome: chr07 Position: 19798833 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 71.28% | 28.72% |
| All Indica | 794 | 94.46% | 5.54% |
| All Japonica | 495 | 44.24% | 55.76% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 43.71% | 56.29% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719798833 | A->G | LOC_Os07g33160(LOC_Os07g33160.1) | Non-Synonymous SNP |