Detailed information of SNP:
|
SNP ID:
sf0719815053(Gbrowse)
Chromosome: chr07 Position: 19815053 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 88.98% | 11.02% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 494 | 86.64% | 13.36% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 48.35% | 51.65% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719815053 | A->C | LOC_Os07g33190(LOC_Os07g33190.1) | Non-Synonymous SNP |