Detailed information of SNP:
|
SNP ID:
sf0719816691(Gbrowse)
Chromosome: chr07 Position: 19816691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 88.07% | 11.93% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 445 | 69.21% | 30.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 59.36% | 40.64% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719816691 | C->T | LOC_Os07g33190(LOC_Os07g33190.1) | Non-Synonymous SNP |