Detailed information of SNP:
|
SNP ID:
sf0719817726(Gbrowse)
Chromosome: chr07 Position: 19817726 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 79.15% | 20.85% |
| All Indica | 776 | 89.18% | 10.82% |
| All Japonica | 497 | 60.16% | 39.84% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 88.58% | 11.42% |
| Indica II | 210 | 83.33% | 16.67% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719817726 | A->G | LOC_Os07g33190(LOC_Os07g33190.1) | Non-Synonymous SNP |