Detailed information of SNP:
|
SNP ID:
sf0719819578(Gbrowse)
Chromosome: chr07 Position: 19819578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.60% | 13.40% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719819578 | G->A | INTERGENIC | None |