Detailed information of SNP:
|
SNP ID:
sf0719820110(Gbrowse)
Chromosome: chr07 Position: 19820110 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 73.15% | 26.85% |
| All Indica | 785 | 77.96% | 22.04% |
| All Japonica | 496 | 60.89% | 39.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 74.66% | 25.34% |
| Indica II | 209 | 81.82% | 18.18% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 58.81% | 41.19% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719820110 | A->G | INTERGENIC | None |