Detailed information of SNP:
|
SNP ID:
sf0719832091(Gbrowse)
Chromosome: chr07 Position: 19832091 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.39% | 42.61% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719832091 | T->C | LOC_Os07g33200(LOC_Os07g33200.1) | UTR_3_PRIME |