Detailed information of SNP:



SNP ID: sf0719832091(Gbrowse)

Chromosome: chr07

Position: 19832091
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 57.39% 42.61%
All Indica799 96.75% 3.25%
All Japonica497 1.01% 98.99%
Aus63 17.46% 82.54%
Indica I375 99.47% 0.53%
Indica II213 93.90% 6.10%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0719832091 T->C LOC_Os07g33200(LOC_Os07g33200.1) UTR_3_PRIME