Detailed information of SNP:
|
SNP ID:
sf0719833480(Gbrowse)
Chromosome: chr07 Position: 19833480 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 77.37% | 22.63% |
| All Indica | 743 | 85.87% | 14.13% |
| All Japonica | 496 | 60.28% | 39.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 83.24% | 16.76% |
| Indica II | 200 | 90.00% | 10.00% |
| Indica Intermediate | 197 | 86.29% | 13.71% |
| Temperate Japonica | 334 | 43.41% | 56.59% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719833480 | C->T | INTERGENIC | None |