Detailed information of SNP:
|
SNP ID:
sf0719883017(Gbrowse)
Chromosome: chr07 Position: 19883017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.33% | 11.67% |
| All Indica | 794 | 90.30% | 9.70% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719883017 | C->T | INTERGENIC | None |