Detailed information of SNP:
|
SNP ID:
sf0719932740(Gbrowse)
Chromosome: chr07 Position: 19932740 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 88.85% | 11.15% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 477 | 67.92% | 32.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 64.58% | 35.42% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 64 | 57.81% | 42.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719932740 | A->G | INTERGENIC | None |