Detailed information of SNP:
|
SNP ID:
sf0719980908(Gbrowse)
Chromosome: chr07 Position: 19980908 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.27% | 39.73% |
| All Indica | 797 | 82.31% | 17.69% |
| All Japonica | 497 | 17.91% | 82.09% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719980908 | T->C | INTERGENIC | None |