Detailed information of SNP:
|
SNP ID:
sf0719998929(Gbrowse)
Chromosome: chr07 Position: 19998929 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.51% | 21.49% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 497 | 79.68% | 20.32% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719998929 | A->G | INTERGENIC | None |