Detailed information of SNP:
|
SNP ID:
sf0720000619(Gbrowse)
Chromosome: chr07 Position: 20000619 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 93.63% | 6.37% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 20 | 5.00% | 95.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720000619 | G->T | INTERGENIC | None |