Detailed information of SNP:
|
SNP ID:
sf0720023022(Gbrowse)
Chromosome: chr07 Position: 20023022 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 54.77% | 45.23% |
| All Indica | 767 | 82.79% | 17.21% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 363 | 87.60% | 12.40% |
| Indica II | 206 | 70.39% | 29.61% |
| Indica Intermediate | 198 | 86.87% | 13.13% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720023022 | A->G | LOC_Os07g33500(LOC_Os07g33500.1) | Synonymous |