Detailed information of SNP:
|
SNP ID:
sf0720024477(Gbrowse)
Chromosome: chr07 Position: 20024477 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 91.75% | 8.25% |
| All Indica | 785 | 91.59% | 8.41% |
| All Japonica | 461 | 91.11% | 8.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 206 | 81.55% | 18.45% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 68 | 51.47% | 48.53% |
| Japonica Intermediate | 60 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720024477 | T->G | LOC_Os07g33500(LOC_Os07g33500.1) | Synonymous |