Detailed information of SNP:
|
SNP ID:
sf0720024567(Gbrowse)
Chromosome: chr07 Position: 20024567 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 68.53% | 31.47% |
| All Indica | 792 | 92.80% | 7.20% |
| All Japonica | 496 | 23.99% | 76.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720024567 | G->T | LOC_Os07g33500(LOC_Os07g33500.1) | Non-Synonymous SNP |