Detailed information of SNP:
|
SNP ID:
sf0720033665(Gbrowse)
Chromosome: chr07 Position: 20033665 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 83.45% | 16.55% |
| All Indica | 788 | 83.88% | 16.12% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720033665 | G->A | INTERGENIC | None |