Detailed information of SNP:
|
SNP ID:
sf0720046691(Gbrowse)
Chromosome: chr07 Position: 20046691 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720046691 | C->T | LOC_Os07g33550(LOC_Os07g33550.1) | Synonymous |