Detailed information of SNP:
|
SNP ID:
sf0720054985(Gbrowse)
Chromosome: chr07 Position: 20054985 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 55.36% | 44.64% |
| All Indica | 789 | 46.39% | 53.61% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 369 | 42.82% | 57.18% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 208 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720054985 | T->C | INTERGENIC | None |