Detailed information of SNP:
|
SNP ID:
sf0720064282(Gbrowse)
Chromosome: chr07 Position: 20064282 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 69.15% | 30.85% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 486 | 22.43% | 77.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 328 | 2.74% | 97.26% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720064282 | G->A | LOC_Os07g33580(LOC_Os07g33580.1) | UTR_3_PRIME |