Detailed information of SNP:
|
SNP ID:
sf0720077748(Gbrowse)
Chromosome: chr07 Position: 20077748 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 55.01% | 44.99% |
| All Indica | 794 | 88.92% | 11.08% |
| All Japonica | 494 | 5.67% | 94.33% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720077748 | T->C | LOC_Os07g33610(LOC_Os07g33610.2) | INTRON |
| sf0720077748 | T->C | LOC_Os07g33610(LOC_Os07g33610.1) | INTRON |