Detailed information of SNP:
|
SNP ID:
sf0720102935(Gbrowse)
Chromosome: chr07 Position: 20102935 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.86% | 31.14% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720102935 | T->C | INTERGENIC | None |