Detailed information of SNP:
|
SNP ID:
sf0720121438(Gbrowse)
Chromosome: chr07 Position: 20121438 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1225 | 82.53% | 17.47% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 306 | 37.25% | 62.75% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 172 | 7.56% | 92.44% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 45 | 48.89% | 51.11% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720121438 | A->C | LOC_Os07g33670(LOC_Os07g33670.1) | Synonymous |