Detailed information of SNP:
|
SNP ID:
sf0720145819(Gbrowse)
Chromosome: chr07 Position: 20145819 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 52.01% | 47.99% |
| All Indica | 795 | 82.01% | 17.99% |
| All Japonica | 497 | 13.08% | 86.92% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720145819 | A->G | INTERGENIC | None |