Detailed information of SNP:
|
SNP ID:
sf0720145829(Gbrowse)
Chromosome: chr07 Position: 20145829 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.82% | 4.18% |
| All Indica | 792 | 95.08% | 4.92% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720145829 | G->A | INTERGENIC | None |