Detailed information of SNP:
|
SNP ID:
sf0720169428(Gbrowse)
Chromosome: chr07 Position: 20169428 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 81.75% | 18.25% |
| All Indica | 784 | 82.91% | 17.09% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 370 | 87.03% | 12.97% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 201 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720169428 | T->C | INTERGENIC | None |