Detailed information of SNP:
|
SNP ID:
sf0720194427(Gbrowse)
Chromosome: chr07 Position: 20194427 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 17.91% | 82.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720194427 | T->C | INTERGENIC | None |