Detailed information of SNP:
|
SNP ID:
sf0720256980(Gbrowse)
Chromosome: chr07 Position: 20256980 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 95.11% | 4.89% |
| All Indica | 795 | 98.11% | 1.89% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 64 | 31.25% | 68.75% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720256980 | A->G | LOC_Os07g33860(LOC_Os07g33860.1) | INTRON |