Detailed information of SNP:
|
SNP ID:
sf0720316876(Gbrowse)
Chromosome: chr07 Position: 20316876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 51.56% | 48.44% |
| All Indica | 788 | 28.17% | 71.83% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 20.81% | 79.19% |
| Indica II | 210 | 21.90% | 78.10% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720316876 | G->A | INTERGENIC | None |