Detailed information of SNP:
|
SNP ID:
sf0720328838(Gbrowse)
Chromosome: chr07 Position: 20328838 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 70.61% | 29.39% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 491 | 19.76% | 80.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 89 | 71.91% | 28.09% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720328838 | T->A | INTERGENIC | None |