Detailed information of SNP:
|
SNP ID:
sf0720353198(Gbrowse)
Chromosome: chr07 Position: 20353198 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 90.65% | 9.35% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 459 | 74.73% | 25.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 87.09% | 12.91% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720353198 | C->T | INTERGENIC | None |