Detailed information of SNP:
|
SNP ID:
sf0720358941(Gbrowse)
Chromosome: chr07 Position: 20358941 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 60.57% | 39.43% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 479 | 17.75% | 82.25% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 78 | 79.49% | 20.51% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720358941 | C->T | INTERGENIC | None |