Detailed information of SNP:
|
SNP ID:
sf0720363939(Gbrowse)
Chromosome: chr07 Position: 20363939 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1177 | 84.79% | 15.21% |
| All Indica | 564 | 69.86% | 30.14% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 246 | 69.92% | 30.08% |
| Indica II | 178 | 73.03% | 26.97% |
| Indica Intermediate | 140 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720363939 | A->G | INTERGENIC | None |