Detailed information of SNP:
|
SNP ID:
sf0720388852(Gbrowse)
Chromosome: chr07 Position: 20388852 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.55% | 33.45% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 495 | 24.44% | 75.56% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720388852 | T->C | LOC_Os07g34100(LOC_Os07g34100.1) | INTRON |