Detailed information of SNP:
|
SNP ID:
sf0720400577(Gbrowse)
Chromosome: chr07 Position: 20400577 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 83.37% | 16.63% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 491 | 57.23% | 42.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 330 | 41.82% | 58.18% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720400577 | T->C | INTERGENIC | None |