Detailed information of SNP:
|
SNP ID:
sf0720402156(Gbrowse)
Chromosome: chr07 Position: 20402156 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.65% | 18.35% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720402156 | G->A | INTERGENIC | None |