Detailed information of SNP:
|
SNP ID:
sf0720407015(Gbrowse)
Chromosome: chr07 Position: 20407015 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.47% | 32.53% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720407015 | T->C | INTERGENIC | None |