Detailed information of SNP:
|
SNP ID:
sf0720415747(Gbrowse)
Chromosome: chr07 Position: 20415747 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.91% | 15.09% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720415747 | C->T | LOC_Os07g34130(LOC_Os07g34130.1) | INTRON |