Detailed information of SNP:
|
SNP ID:
sf0720473334(Gbrowse)
Chromosome: chr07 Position: 20473334 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 97.31% | 2.69% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 462 | 93.07% | 6.93% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 67 | 64.18% | 35.82% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720473334 | A->C | INTERGENIC | None |