Detailed information of SNP:
|
SNP ID:
sf0720527674(Gbrowse)
Chromosome: chr07 Position: 20527674 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.49% | 6.51% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 495 | 83.84% | 16.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720527674 | G->A | INTERGENIC | None |