Detailed information of SNP:
|
SNP ID:
sf0720544042(Gbrowse)
Chromosome: chr07 Position: 20544042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 95.57% | 4.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 478 | 87.45% | 12.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 95.72% | 4.28% |
| Tropical Japonica | 88 | 71.59% | 28.41% |
| Japonica Intermediate | 63 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720544042 | C->T | INTERGENIC | None |