Detailed information of SNP:
|
SNP ID:
sf0720570916(Gbrowse)
Chromosome: chr07 Position: 20570916 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 60.12% | 39.88% |
| All Indica | 767 | 32.46% | 67.54% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 356 | 28.93% | 71.07% |
| Indica II | 210 | 22.86% | 77.14% |
| Indica Intermediate | 201 | 48.76% | 51.24% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720570916 | A->T | INTERGENIC | None |