Detailed information of SNP:
|
SNP ID:
sf0720574459(Gbrowse)
Chromosome: chr07 Position: 20574459 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.81% | 49.19% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 334 | 7.78% | 92.22% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720574459 | T->A | INTERGENIC | None |