Detailed information of SNP:
|
SNP ID:
sf0720590056(Gbrowse)
Chromosome: chr07 Position: 20590056 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 70.02% | 29.98% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 489 | 18.20% | 81.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 327 | 8.87% | 91.13% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720590056 | A->G | LOC_Os07g34360(LOC_Os07g34360.1) | Non-Synonymous SNP |