Detailed information of SNP:
|
SNP ID:
sf0720610330(Gbrowse)
Chromosome: chr07 Position: 20610330 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1257 | 84.17% | 15.83% |
| All Indica | 647 | 70.79% | 29.21% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 294 | 51.02% | 48.98% |
| Indica II | 164 | 92.07% | 7.93% |
| Indica Intermediate | 189 | 83.07% | 16.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720610330 | C->T | INTERGENIC | None |