Detailed information of SNP:
|
SNP ID:
sf0720630799(Gbrowse)
Chromosome: chr07 Position: 20630799 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 89.16% | 10.84% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 492 | 70.93% | 29.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 332 | 59.94% | 40.06% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720630799 | T->C | INTERGENIC | None |