Detailed information of SNP:
|
SNP ID:
sf0720635951(Gbrowse)
Chromosome: chr07 Position: 20635951 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1259 | 55.60% | 44.40% |
| All Indica | 687 | 95.92% | 4.08% |
| All Japonica | 459 | 1.74% | 98.26% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 327 | 97.86% | 2.14% |
| Indica II | 199 | 97.49% | 2.51% |
| Indica Intermediate | 161 | 90.06% | 9.94% |
| Temperate Japonica | 333 | 0.00% | 100.00% |
| Tropical Japonica | 62 | 4.84% | 95.16% |
| Japonica Intermediate | 64 | 7.81% | 92.19% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 32 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720635951 | C->T | INTERGENIC | None |