Detailed information of SNP:
|
SNP ID:
sf0720660364(Gbrowse)
Chromosome: chr07 Position: 20660364 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.97% | 14.03% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720660364 | A->G | INTERGENIC | None |