Detailed information of SNP:
|
SNP ID:
sf0720666864(Gbrowse)
Chromosome: chr07 Position: 20666864 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1260 | 82.06% | 17.94% |
| All Indica | 741 | 88.26% | 11.74% |
| All Japonica | 401 | 67.83% | 32.17% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 346 | 91.62% | 8.38% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 191 | 79.06% | 20.94% |
| Temperate Japonica | 272 | 70.96% | 29.04% |
| Tropical Japonica | 79 | 58.23% | 41.77% |
| Japonica Intermediate | 50 | 66.00% | 34.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0720666864 | G->A | INTERGENIC | None |